PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35610.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NF-YC
Protein Properties Length: 216aa    MW: 24038.9 Da    PI: 4.7383
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35610.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.65.7e-56481511101
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql+sfwe+q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaavtrtdifdflvdiv
  KFK35610.1  48 QLQSFWETQfkeIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIV 146
                 89*****999999************************************************************************************** PP

       NF-YC  97 prdel 101
                 pr++l
  KFK35610.1 147 PREDL 151
                 **986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.29E-3318142IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.0E-3862134IPR009072Histone-fold
PfamPF008085.1E-2270133IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDQQGQSTAM NYGSNPYQAN PMATAAAGPD HAAYHQIHQQ QQQQLTQQLQ SFWETQFKEI  60
EKTTDFKNHS LPLARIKKIM KADEDVRMIS AEAPVVFARA CEMFILELTL RSWNHTEENK  120
RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGAVG AEAATAAGYP YGFLPPGTAP  180
IGNSGMVMGN PGAYPSNPYM GQPLWQQGPD QQDPDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C6e-414914819119HapE
4g91_C6e-414914819119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0648400.0AC064840.2 Arabidopsis thaliana chromosome I BAC T24C10 genomic sequence, complete sequence.
GenBankAC0691440.0AC069144.9 Arabidopsis thaliana chromosome 1 BAC F14C21 genomic sequence, complete sequence.
GenBankAY0627750.0AY062775.1 Arabidopsis thaliana Unknown protein (At1g54830; T22H22.22) mRNA, complete cds.
GenBankAY0816540.0AY081654.1 Arabidopsis thaliana unknown protein (At1g54830) mRNA, complete cds.
GenBankAY0875170.0AY087517.1 Arabidopsis thaliana clone 36272 mRNA, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT22H220.0AC005388.1 Sequence of BAC T22H22 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_175880.11e-135nuclear transcription factor Y subunit C-3
RefseqNP_849808.11e-135nuclear transcription factor Y subunit C-3
RefseqNP_974030.11e-135nuclear transcription factor Y subunit C-3
SwissprotQ9ZVL31e-137NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLA0A087H0F81e-163A0A087H0F8_ARAAL; Nuclear transcription factor y subunit c-9
STRINGAT1G54830.11e-135(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.31e-127nuclear factor Y, subunit C3